cluster_volume
label connected components in a thresholded MINC volume
cluster_volume input.mnc output.mnc min_threshold max_threshold [6|26]
DESCRIPTION
cluster_volume creates a label volume where each connected component of voxels with values between min_threshold and max_threshold (inclusive) is assigned a distinct label number. The connectivity can be specified as 6-neighbour (face-connected) or 26-neighbour (face-, edge-, and corner-connected).
OPTIONS
This tool uses positional arguments only. There are no named options.
min_threshold- The minimum voxel value for inclusion in a cluster.
max_threshold- The maximum voxel value for inclusion in a cluster.
6|26- Connectivity type. Use 6 for face-connected neighbours or 26 for fully connected neighbours. Defaults to 26 if not specified.
EXAMPLES
Label connected components with values between 0.5 and 1.5 using 26-connectivity:
cluster_volume input.mnc output.mnc 0.5 1.5
Label with 6-connectivity:
cluster_volume input.mnc output.mnc 0.5 1.5 6
AUTHOR
David MacDonald - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © by David MacDonald