create_landmark_full_volume
create a label volume from landmark tag files
create_landmark_full_volume example_volume output_volume structure_id|-1 n|0 radius tag_file1 tag_file2 ...
DESCRIPTION
create_landmark_full_volume creates a label volume from one or more landmark tag files. Each tag point is expanded into a sphere of the specified radius and assigned the given structure ID label. If structure_id is -1, the structure IDs are read from the tag files. The n parameter controls how many tag points to use (0 for all). The example volume provides the sampling grid for the output.
OPTIONS
This tool uses positional arguments only. There are no named options.
example_volume- The input MINC volume providing the spatial sampling grid.
output_volume- The output MINC label volume.
structure_id|-1- The label value to assign to each landmark region, or -1 to use structure IDs from the tag files.
n|0- The number of tag points to use, or 0 for all tag points.
radius- The radius (in mm) of the sphere placed at each tag point.
tag_file1 tag_file2 ...- One or more tag point files containing landmark positions.
EXAMPLES
Create landmarks from a tag file with structure ID 5 and radius 3mm:
create_landmark_full_volume template.mnc output.mnc 5 0 3.0 landmarks.tag
Use structure IDs from the tag file:
create_landmark_full_volume template.mnc output.mnc -1 0 2.0 landmarks.tag
AUTHOR
David MacDonald - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © by David MacDonald