pipeline_face.pl
FACE anatomical feature extraction pipeline
pipeline_face.pl <t1_tal> <mask_tal> <cls_tal> <labels_tal> <xfm_tal> <nlxfm_tal> <output>
DESCRIPTION
pipeline_face.pl extracts anatomical features using the FACE (Feature Anatomical Classification and Extraction) method. It takes a T1-weighted volume in Talairach space along with a brain mask, tissue classification, lobe labels, and both linear and nonlinear transforms, and produces a set of anatomical feature measurements.
The output contains quantitative measurements of various brain structures derived from the combination of classification, segmentation, and registration results.
OPTIONS
--verbose- Print progress information during processing.
--clobber- Overwrite output files if they already exist.
EXAMPLES
Extract FACE features from a fully processed subject:
pipeline_face.pl t1_tal.mnc mask_tal.mnc cls_tal.mnc \
labels_tal.mnc tal.xfm nl.xfm face_output
Run with verbose output:
pipeline_face.pl t1_tal.mnc mask_tal.mnc cls_tal.mnc \
labels_tal.mnc tal.xfm nl.xfm face_output --verbose
AUTHOR
Vladimir S. Fonov - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.