pipeline_launch_all_segment.pl
launch all segmentation pipeline variants for a subject visit
pipeline_launch_all_segment.pl <subject_visit>
DESCRIPTION
pipeline_launch_all_segment.pl is a convenience script that launches all available segmentation sub-pipelines for a given subject visit. This includes tissue classification, lobe segmentation, and related processing steps. It automates the sequential execution of the individual segmentation pipeline components, ensuring consistent processing across subjects.
The script takes a subject visit identifier and runs the full suite of segmentation tools, including classification and lobe segmentation, using the standard pipeline conventions for file naming and directory structure.
OPTIONS
-verbose- Print progress information during processing.
-clobber- Overwrite output files if they already exist.
-noresample- Skip resampling steps, using previously resampled volumes if available.
EXAMPLES
Launch all segmentation pipelines for a subject visit:
pipeline_launch_all_segment.pl subject01_visit1
Launch with verbose output:
pipeline_launch_all_segment.pl subject01_visit1 -verbose
Launch with clobber to reprocess:
pipeline_launch_all_segment.pl subject01_visit1 -clobber
AUTHOR
Vladimir S. Fonov - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.