pipeline_launch_pve.pl
launch all partial volume estimation pipeline variants
pipeline_launch_pve.pl <subject_visit>
DESCRIPTION
pipeline_launch_pve.pl is a convenience script that launches all partial volume estimation (PVE) pipeline variants for a given subject visit. It automates the execution of the PVE processing steps, which estimate the fractional tissue content of each voxel — accounting for the fact that a single voxel may contain a mixture of white matter, grey matter, and cerebrospinal fluid.
The script takes a subject visit identifier and runs the PVE pipeline using the standard pipeline conventions for file naming and directory structure.
OPTIONS
-verbose- Print progress information during processing.
-clobber- Overwrite output files if they already exist.
-noresample- Skip resampling steps, using previously resampled volumes if available.
EXAMPLES
Launch PVE pipelines for a subject visit:
pipeline_launch_pve.pl subject01_visit1
Launch with verbose output and overwrite:
pipeline_launch_pve.pl subject01_visit1 -verbose -clobber
AUTHOR
Vladimir S. Fonov - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.