pipeline_qc_face.pl
generate QC face renderings from three angles
pipeline_qc_face.pl <native> <candID> <visit> <age> <output> [--stx <xfm>]
DESCRIPTION
pipeline_qc_face.pl generates quality control images showing face renderings from three different viewing angles (typically front, left, and right profiles). These images are used to verify the quality of defacing or to inspect the facial surface reconstruction.
The script takes a native-space volume and produces a composite QC image. An optional stereotaxic transform can be provided with –stx to align the rendering to standard orientation. The output is annotated with candidate ID, visit label, and age.
OPTIONS
--verbose- Print progress information during processing.
--fake- Generate placeholder QC images without performing actual rendering.
--clobber- Overwrite the output file if it already exists.
--stx <xfm>- Stereotaxic transformation file to align the volume to standard orientation before rendering.
EXAMPLES
Generate face QC images:
pipeline_qc_face.pl native_t1.mnc CAND001 V1 25 qc_face.jpg
Generate with a stereotaxic transform:
pipeline_qc_face.pl native_t1.mnc CAND001 V1 25 qc_face.jpg \
--stx tal.xfm
Generate placeholder images for testing:
pipeline_qc_face.pl native_t1.mnc CAND001 V1 25 qc_face.jpg --fake
AUTHOR
Vladimir S. Fonov - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.