pipeline_qc_reg.pl
generate QC image for nonlinear registration quality
pipeline_qc_reg.pl <nl_t1w> <candID> <visit> <age> <output>
DESCRIPTION
pipeline_qc_reg.pl generates a quality control image to assess the quality of nonlinear registration. The script takes the nonlinearly registered T1-weighted volume and produces a QC image that allows visual comparison of the registered brain with the template anatomy.
The output image is annotated with candidate ID, visit label, and age. Poor registration will be visible as anatomical misalignment with the expected template appearance.
OPTIONS
--verbose- Print progress information during processing.
--fake- Generate a placeholder QC image without performing actual rendering.
--clobber- Overwrite the output file if it already exists.
EXAMPLES
Generate a nonlinear registration QC image:
pipeline_qc_reg.pl nl_t1_tal.mnc CAND001 V1 25 qc_nlreg.jpg
Generate with verbose output:
pipeline_qc_reg.pl nl_t1_tal.mnc CAND001 V1 25 qc_nlreg.jpg --verbose
Generate a placeholder image for testing:
pipeline_qc_reg.pl nl_t1_tal.mnc CAND001 V1 25 qc_nlreg.jpg --fake
AUTHOR
Vladimir S. Fonov - McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.
COPYRIGHTS
Copyright © McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University.